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 <title><![CDATA[ Column Cleaning and HPLC Peak Splitting]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=124</link>
<description><![CDATA[Here is an example of how a quick and simple cleaning can restore column performance. In HPLC, peak splitting in an established method that was previously performing well, is most often attributed to column contamination at the column head. The method in question is a fast screening method with a 25mM pH 2.6 phosphate buffer and methanol. The "After" chromatogram is typical of the method (i.e. fully resolved peaks were never needed in this method and resolution was sacrificed for speed). Cleaning was done by reversing the column and running 100% isopropanol at 0.25ml/min for one hour.
 <br /><br />
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/dirty-column-big.jpg" rel="lightbox" title="Click to enlarge. 42kB."><img src="http://www.dreamingspirals.com/media/dirty-column-small.jpg"  alt="" /></a><br /><br />]]></description>
 <category>HPLC</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=124</comments>
 <pubDate>Sun, 13 Jul 2008 09:23:35 -0400</pubDate>
</item><item>
 <title><![CDATA[The Good, The Bad and The Solvent Effect]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=123</link>
<description><![CDATA[The solvent effect occurs when the sample solvent is vaporized during injection and condenses on a cool column. Where "cool" is relative to the boiling point of the injection solvent and is often ten to twenty degrees below the boiling point of said solvent. Typically, this serves to trap analytes in a narrow band producing sharp peaks. However, solvent effects can also have a negative impact. In this example we have two main solvents as listed in the following table:<br /><br />

<TABLE FRAME=VOID CELLSPACING=0 COLS=2 RULES=GROUPS BORDER=1 ALIGN=CENTER>
	<COLGROUP><COL WIDTH=60><COL WIDTH=66></COLGROUP>
	<thead>
		<TR>
			<TH WIDTH=60 HEIGHT=39 ALIGN=CENTER>Solvent<br /></TD>
			<TH WIDTH=66 ALIGN=CENTER>Boiling Point</TD>
		</TR>
<TBODY>
		<TR>
			<TD HEIGHT=17 ALIGN=CENTER">Acetone</TD>
			<TD ALIGN=CENTER>56.5&deg;C</TD>
		</TR>
		<TR>
			<TD HEIGHT=17 ALIGN=CENTER>Acetonitrile</TD>
			<TD ALIGN=CENTER>82&deg;C</TD>
		</TR>
	</TBODY>
</TABLE><br />

The GC method in use, is one using splitless injection with an injector temperature of 250&deg;C and an initial oven temperature of 70&deg;C. Based on the boiling points we can see that there will be solvent effects from both acetone and acetonitrile. In the following chromatograms the concentration of acetone is increased while the concentration of acetonitrile is decreased and the concentration of the analytes is held constant. In effect this creates multiple solvent effects at the head of the column, resulting in the greatest peak distortion when the ratios are around 50:50. We can see that increasing acetone concentration decreases the amount of peak distortion until sharp peaks are obtained at a concentration of 90% acetone. <br /><br />
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/solvent/26-Ace-big.jpg" rel="lightbox" title="Click to enlarge. 12kB."><img src="http://www.dreamingspirals.com/media/solvent/26-Ace-small.jpg"  alt="" /></a><br /><br />
<a href="http://www.dreamingspirals.com/media/solvent/48-Ace-big.jpg" rel="lightbox" title="Click to enlarge. 12kB."><img src="http://www.dreamingspirals.com/media/solvent/48-Ace-small.jpg"  alt="" /></a><br /><br />
<a href="http://www.dreamingspirals.com/media/solvent/68-Ace-big.jpg" rel="lightbox" title="Click to enlarge. 12kB."><img src="http://www.dreamingspirals.com/media/solvent/68-Ace-small.jpg"  alt="" /></a><br /><br />
<a href="http://www.dreamingspirals.com/media/solvent/90-Ace-big.jpg" rel="lightbox" title="Click to enlarge. 12kB."><img src="http://www.dreamingspirals.com/media/solvent/90-Ace-small.jpg"  alt="" /></a></div><br /><br />
]]></description>
 <category>GC-MS</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=123</comments>
 <pubDate>Mon, 30 Jun 2008 21:46:11 -0400</pubDate>
</item><item>
 <title><![CDATA[It's alive!]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=122</link>
<description><![CDATA[DreamingSpirals is back. Links have been fixed. Mod Rewrite for pretty URLs. Dead links fixed (most of them anyway). Updated "about page." Fixed iPhone issues.<br />
<div style="text-align: center"><img src="http://www.dreamingspirals.com/media/aliveds.jpg"  alt=""></div><br />]]></description>
 <category>General</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=122</comments>
 <pubDate>Sun, 29 Jun 2008 09:47:40 -0400</pubDate>
</item><item>
 <title><![CDATA[Vial Fill and Injection Reproducibility in GC/MS]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=120</link>
<description><![CDATA[Vial fill effecting reproducibility was mentioned in an Agilent document called something like  "Maximizing Reproducibility in GC/MS Analysis."   In this paper one of the suggestions was consistent vial fill volume with a suggested fill of 1mL. Can vial fill level have an impact on reproducibility? To find out I ran five replicates at 0.5mL, 1.0mL and 1.5mL. All samples were transferred using a Rainin EDP pipette. The method is a rapid ethanol analysis with acetonitrile as the internal standard and acetone as the solvent. The working ethanol concentration was 0.6% with a 100:1 split ratio and a injection volume of 0.1uL. A 5uL syringe was in the 7683 ALS. As you can see the 1mL fill was indeed the most reproducible. <br />
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/vial%20fill/graph.gif" rel="lightbox" title="Click to enlarge. 34kB."><img src="http://www.dreamingspirals.com/media/vial%20fill/graph-small.gif"  alt="" /></a></div><br />
]]></description>
 <category>GC-MS</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=120</comments>
 <pubDate>Sun, 3 Dec 2006 10:50:00 -0500</pubDate>
</item><item>
 <title><![CDATA[Minimizing the delay volume on the Agilent 1100.]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=119</link>
<description><![CDATA[Agilent recently published information on decreasing the delay volume on the 1100. I like to save time whenever possible so I decided to give this a try.  The method in question is the same one that I described <a href="http://www.dreamingspirals.com/item.php/2006/10/26/temperature-in-hplc-separations">here</a>. 
The method was modified with an injector program to switch the valve to bypass at one minute into the run. This is before the gradient starts so switching back to main-pass before during the next injection will not effect the retention times or the second sample.  As you can see the elution time of the last peak decreased significantly. <br />

<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/injpro/no-rt.gif" rel="lightbox" title="Click to enlarge. 34kB."><img src="http://www.dreamingspirals.com/media/injpro/no-rt-small-2.gif"  alt="" /></a></div><br />

This decrease and setting the autosampler to pre-fetch the net vial saves about 50 seconds per sample. This can add up fast when you have 20 or more samples to run.  ]]></description>
 <category>HPLC</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=119</comments>
 <pubDate>Wed, 29 Nov 2006 19:54:36 -0500</pubDate>
</item><item>
 <title><![CDATA[Inlet temperature optimization]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=118</link>
<description><![CDATA[Many texts report that an inlet temperature of 250&deg;C is sufficient for most samples. While it may be sufficient it may not be the optimum temperature for your specific sample. The selection of the inlet parameters should yield rapid and complete vaporization, without sample back flash or degradation. Here is an example of how important inlet temperature can be. 
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/inlet-temp-1-big.gif" rel="lightbox" title="Click to enlarge. 34kB."><img src="http://www.dreamingspirals.com/media/inlet-temp-1-small.gif"  alt="" /></a></div><br />

The sample being analyzed is a <a href="http://del.icio.us/LostCosmos/PFBOA">PFBOA</a> derivative dissolved in acetonitrile. The inlet liner is an SGE tapered focus liner. Pulsed splitless mode was used with a pulse pressure of 14psi for 0.5min. Purge flow was active at 0.04min with a flow of 25mL/min. As you can see the peak area increases as the inlet temperature increases up to 175&deg;C and then starts decreasing with increasing temperature. In this particular case we are seeing sample degradation as opposed to back flash.
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/graph-big.gif" rel="lightbox" title="Click to enlarge. 6kB."><img src="http://www.dreamingspirals.com/media/graph-small.gif"  alt="" /></a></div><br />]]></description>
 <category>GC-MS</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=118</comments>
 <pubDate>Tue, 21 Nov 2006 19:10:16 -0500</pubDate>
</item><item>
 <title><![CDATA[Reference Wavelengths]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=117</link>
<description><![CDATA[A reference is great for correcting for baseline changes but is not always needed, and when set incorrectly have detrimental effects. Here is a comparison of the same sample analysis with different collection parameters.  Two sets of collection parameters were collected simultaneously: The first being a sample wavelength of 210nm with the reference turned off. The second used the same sample wavelength parameters but with the reference set to a typical 360nm with a band width of 100nm. We can see the reference-off chromatogram looks normal, while the chromatogram with a reference of 360nm shows many negative peaks.<br /><br />
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/ref/ref-1-big.gif" rel="lightbox" title="Click to enlarge. 27kB."><img src="http://www.dreamingspirals.com/media/ref/ref-1-small.gif"  alt="" /></a></div><br />
 The sample in question contains multiple compounds that absorb through the entire UV and into the visible. Here is the spectrum of one of the peaks with the reference highlighted. <br /><br />
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/ref/ref-1-spec-big.gif" rel="lightbox" title="Click to enlarge. 10kB."><img src="http://www.dreamingspirals.com/media/ref/ref-1-spec-small.gif"  alt="" /></a></div><br />
When compounds elute that absorb in the reference range (310nm to 410nm) Chemstation offsets the absorbance at 210nm accordingly. This is obviously an extreme example, but demonstrates the need of the analyst to be on guard for cases where the impact of incorrect reference is less apparent.   <br />
]]></description>
 <category>HPLC</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=117</comments>
 <pubDate>Sun, 12 Nov 2006 14:58:49 -0500</pubDate>
</item><item>
 <title><![CDATA[Server Status]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=116</link>
<description><![CDATA[<div class="rightbox"><img src="http://www.dreamingspirals.com/media/spiral-pt.gif"></div>Dear Faithful DS Readers,<br /><br />
  You may have noticed that DS was off-line for approximately 72 hours. The cause of this is not clear, but this is the second time in three months that my host, Vizaweb, has left me and many <a href="http://digg.com/tech_news/Vizaweb_Gone_Dark_with_No_Explanation">others</a> hanging for over twenty-four hours. There were rumors that the owners had cut and run. Vizaweb was unreachable by email, phone or even fax. Well it looks like they're back, at least for now. Currently, I am in the process of backing up all content (I store a lot of research in the protected DS vault) and moving to a new host. I will continue to post new content here and on the new host. When I have all the bugs worked out on the new server, I will point dreamingspirals.com to the new ip address. <br /><br />

Sincerely,<br />
George (lostcosmos)

]]></description>
 <category>General</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=116</comments>
 <pubDate>Fri, 10 Nov 2006 17:24:10 -0500</pubDate>
</item><item>
 <title><![CDATA[Troubleshooting High Pressure Ripple: Part 2]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=115</link>
<description><![CDATA[<a href="http://www.dreamingspirals.com/media/pressure-ripple/pr-part2-2.gif" rel="lightbox" title="Click to enlarge.">Here</a> is an example of pressure ripple in a binary pump. Purging the pump did not reduce the pressure ripple as it did in "Troubleshooting High Pressure Ripple Part 1". A little more work is required this time. As with most flow processes, we can segment the system step wise to find the source of the problem. Isolating the origin of the ripple starts with:
<ol><li> Installing a restriction capillary<br />
   In order to effectively troubleshoot we need to keep the pressure above 50bar, but also want to eliminate having to equilibrate the column after each step. A restriction capillary is ideal for the purpose.
</li>
<li>Run 100% A:<br /> <div style="text-align: center"><img src="http://www.dreamingspirals.com/media/pressure-ripple/pr2-a-only.gif"></div><br />
After changing to 100% A the pressure ripple is gone. This eliminates the A channel from the list of possible sources. This also eliminates all the flow path components that the A and B channels share.
</li>
<li>Run 100% B:<br />
<div style="text-align: center"><img src="http://www.dreamingspirals.com/media/pressure-ripple/pr3-b-only.gif"></div><br />
We can see that the pressure ripple is isolated to the B channel.
</li>
<li>Run 100% B2: <br />
<div style="text-align: center"><img src="http://www.dreamingspirals.com/media/pressure-ripple/pr4-b2-only.gif"></div>
This eliminates the pistons and seals as the cause of the ripple. (Note that the initial pressure drop is air being purged from the B2 channel.) We now know that the cause of the pressure ripple is on the B side of the pump and specific to the B1 channel. There are three remaining suspects: the solvent selection valve, the inlet filter or the B1 mobile phase. Changing the inlet filter is the easiest so that's a good place to start. 
</li>
<li> New Inlet Filter:
<div style="text-align: center"><img src="http://www.dreamingspirals.com/media/pressure-ripple/pr5-b1-only-new-inletf2.gif"></div>
From ripple to stable in only four steps. This final graphic was squished to show all the steps in one and the ripple looks a little higher than it is. A closer view shows no more than pressure noise: 
<div style="text-align: center"><img src="http://www.dreamingspirals.com/media/pressure-ripple/pr6-pressure-zoom.gif"></div>
</li>
</ol>
]]></description>
 <category>HPLC</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=115</comments>
 <pubDate>Tue, 7 Nov 2006 19:38:34 -0500</pubDate>
</item><item>
 <title><![CDATA[My Great, Great, Great Grandfather's Scale]]></title>
 <link>http://www.dreamingspirals.com/index.php?itemid=114</link>
<description><![CDATA[My G^3 GD was an <a href="http://www.history.org/Almanack/life/trades/tradeapo.cfm">Apothecary</a>. This was his scale. It stays on the self most of the time, collecting dust, but I can't help but imagine the potions that pasted over it from Apothecary to patient. 
<div style="text-align: center"><a href="http://www.dreamingspirals.com/media/scale-1-big.jpg" rel="lightbox" title="Click to enlarge. 83kB."><img src="http://www.dreamingspirals.com/media/scale-1-small.jpg"  alt="" /></a></div><br />]]></description>
 <category>General</category>
<comments>http://www.dreamingspirals.com/index.php?itemid=114</comments>
 <pubDate>Mon, 6 Nov 2006 19:00:10 -0500</pubDate>
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